Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_18750 | Not Available | Negative | 4407091 - 4407294 | 7696.4 |
| glycosyl hydrolase family 88 | DWZ36_18755 | Not Available | Positive | 4407628 - 4408926 | 49874.6 |
| hypothetical protein | DWZ36_18760 | Not Available | Negative | 4408984 - 4409481 | 18619.8 |
| hypothetical protein | DWZ36_18765 | Not Available | Negative | 4409494 - 4410141 | 24488.9 |
| hypothetical protein | DWZ36_18770 | Not Available | Positive | 4410321 - 4410569 | 9283.78 |
| hypothetical protein | DWZ36_18775 | Not Available | Positive | 4410774 - 4410992 | 7976.9 |
| thioredoxin | DWZ36_18780 | Not Available | Positive | 4410995 - 4411474 | 17688.5 |
| transcriptional regulator | DWZ36_18785 | Not Available | Positive | 4411512 - 4411859 | 13307.3 |
| d-alanyl-d-alanine dipeptidase | DWZ36_18790 | Not Available | Positive | 4411883 - 4412548 | 25274.8 |
| sam-dependent methyltransferase | DWZ36_18795 | Not Available | Positive | 4412552 - 4413736 | 43813.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

