Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | DWZ36_18650 | Not Available | Negative | 4382517 - 4384529 | 72467.5 |
| atpase | DWZ36_18655 | Not Available | Negative | 4384664 - 4386262 | 57760.0 |
| l-arabinose isomerase | DWZ36_18660 | Not Available | Negative | 4386365 - 4387894 | 57198.4 |
| l-ribulose-5-phosphate 4-epimerase | DWZ36_18665 | Not Available | Negative | 4387934 - 4388620 | 25021.8 |
| nudix hydrolase | DWZ36_18670 | Not Available | Negative | 4388691 - 4389368 | 26233.5 |
| sss family transporter | DWZ36_18675 | Not Available | Negative | 4389444 - 4391186 | 64455.8 |
| galactose mutarotase | DWZ36_18680 | Not Available | Negative | 4391213 - 4392367 | 41965.6 |
| galactokinase | DWZ36_18685 | Not Available | Negative | 4392564 - 4393718 | 42994.0 |
| mfs transporter | DWZ36_18690 | Not Available | Negative | 4393759 - 4395099 | 47498.5 |
| galactose mutarotase | DWZ36_18695 | Not Available | Negative | 4395146 - 4396240 | 39972.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

