Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s46 family peptidase | DWZ36_18545 | Not Available | Negative | 4349854 - 4351980 | 80074.8 |
| tigr00341 family protein | DWZ36_18550 | Not Available | Negative | 4351985 - 4353349 | 50535.2 |
| lipopolysaccharide biosynthesis protein | DWZ36_18555 | Not Available | Negative | 4353352 - 4354797 | 54344.9 |
| holliday junction branch migration dna helicase ruvb | DWZ36_18560 | Not Available | Negative | 4354801 - 4355829 | 38022.6 |
| site-specific integrase | DWZ36_18565 | Not Available | Positive | 4355956 - 4357074 | 43298.0 |
| response regulator | DWZ36_18570 | Not Available | Negative | 4357602 - 4361654 | 154961.0 |
| glycoside hydrolase | DWZ36_18580 | Not Available | Positive | 4361891 - 4364398 | 94368.3 |
| glycoside hydrolase | DWZ36_18585 | Not Available | Positive | 4364407 - 4365990 | 60272.5 |
| glycosyhydrolase | DWZ36_18590 | Not Available | Positive | 4366003 - 4368597 | 99458.8 |
| alpha-glucuronidase | DWZ36_18595 | Not Available | Positive | 4368594 - 4370639 | 77119.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

