Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | DWZ36_18435 | Not Available | Positive | 4329719 - 4331308 | 60726.6 |
| hypothetical protein | DWZ36_18445 | Not Available | Positive | 4331627 - 4331845 | 8065.89 |
| hypothetical protein | DWZ36_18450 | Not Available | Negative | 4332117 - 4333100 | 37901.9 |
| hypothetical protein | DWZ36_18455 | Not Available | Negative | 4333129 - 4333351 | 8460.99 |
| hypothetical protein | DWZ36_18460 | Not Available | Negative | 4333482 - 4335092 | 61705.3 |
| hypothetical protein | DWZ36_18465 | Not Available | Negative | 4335264 - 4336355 | 41150.1 |
| hypothetical protein | DWZ36_18470 | Not Available | Negative | 4336638 - 4337579 | 37048.0 |
| transposase | DWZ36_18475 | Not Available | Negative | 4337662 - 4338930 | 49275.0 |
| Trna-met | Not Available | Not Available | Positive | 4339069 - 4339145 | Not Available |
| calcium-translocating p-type atpase, pmca-type | DWZ36_18485 | Not Available | Positive | 4339301 - 4341931 | 97112.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

