Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DWZ36_18380 | Not Available | Negative | 4320042 - 4320878 | 32322.8 |
| hypothetical protein | DWZ36_18385 | Not Available | Negative | 4320882 - 4321211 | 12743.1 |
| para family protein | DWZ36_18390 | Not Available | Positive | 4321498 - 4322256 | 27555.5 |
| hypothetical protein | DWZ36_18395 | Not Available | Positive | 4322261 - 4322518 | 9309.24 |
| fimbrillin family protein | DWZ36_18400 | Not Available | Negative | 4322706 - 4323824 | 41194.3 |
| duf5119 domain-containing protein | DWZ36_18405 | Not Available | Negative | 4323868 - 4324788 | 34214.2 |
| duf3575 domain-containing protein | DWZ36_18410 | Not Available | Negative | 4324785 - 4326005 | 46668.5 |
| luxr family transcriptional regulator | DWZ36_18415 | Not Available | Positive | 4326316 - 4327374 | 40775.3 |
| atp-binding protein | DWZ36_18420 | Not Available | Negative | 4327680 - 4328960 | 49138.9 |
| helix-turn-helix domain-containing protein | DWZ36_18430 | Not Available | Positive | 4329376 - 4329726 | 13369.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

