Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3945 domain-containing protein | DWZ36_18165 | Not Available | Positive | 4279086 - 4280645 | 58899.6 |
| duf3991 domain-containing protein | DWZ36_18170 | Not Available | Positive | 4280650 - 4281759 | 42741.0 |
| hypothetical protein | DWZ36_18175 | Not Available | Positive | 4281756 - 4282259 | 20038.8 |
| plasmid transfer protein | DWZ36_18180 | Not Available | Positive | 4282240 - 4282947 | 26606.8 |
| dna topoisomerase i | DWZ36_18185 | Not Available | Positive | 4282948 - 4283784 | 31691.2 |
| hypothetical protein | DWZ36_18190 | Not Available | Positive | 4283781 - 4284134 | 13934.3 |
| hu family dna-binding protein | DWZ36_18195 | Not Available | Positive | 4284146 - 4284424 | 10589.0 |
| hypothetical protein | DWZ36_18200 | Not Available | Positive | 4284415 - 4284687 | 10359.4 |
| hypothetical protein | DWZ36_18205 | Not Available | Positive | 4284698 - 4285141 | 16577.4 |
| hypothetical protein | DWZ36_18210 | Not Available | Negative | 4285204 - 4285773 | 22666.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

