Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capa family protein | DWZ36_17960 | Not Available | Negative | 4236759 - 4237832 | 40884.5 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DWZ36_17965 | Not Available | Negative | 4238768 - 4239649 | 31535.7 |
| signal recognition particle protein | DWZ36_17970 | Not Available | Negative | 4239763 - 4241085 | 48854.7 |
| mate family efflux transporter | DWZ36_17975 | Not Available | Negative | 4241184 - 4242506 | 48738.5 |
| hypothetical protein | DWZ36_17980 | Not Available | Positive | 4242847 - 4244208 | 49038.1 |
| rna polymerase sigma-70 factor | DWZ36_17985 | Not Available | Negative | 4244267 - 4244827 | 21971.5 |
| duf1624 domain-containing protein | DWZ36_17990 | Not Available | Negative | 4244852 - 4245943 | 40470.6 |
| beta-hexosaminidase | DWZ36_17995 | Not Available | Positive | 4246144 - 4248567 | 91072.6 |
| gamma-carboxymuconolactone decarboxylase | DWZ36_18000 | Not Available | Positive | 4248801 - 4249631 | 31013.8 |
| hypothetical protein | DWZ36_18005 | Not Available | Positive | 4249766 - 4250980 | 45647.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

