Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DWZ36_17910 | Not Available | Positive | 4219490 - 4220266 | 29363.3 |
| hypothetical protein | DWZ36_17915 | Not Available | Positive | 4220799 - 4220987 | 6806.25 |
| stas domain-containing protein | DWZ36_17920 | Not Available | Negative | 4221177 - 4222859 | 60541.7 |
| duf4884 domain-containing protein | DWZ36_17925 | Not Available | Negative | 4222958 - 4223227 | 10182.1 |
| rubrerythrin family protein | DWZ36_17930 | Not Available | Positive | 4223408 - 4223986 | 21626.4 |
| hybrid sensor histidine kinase/response regulator | DWZ36_17935 | Not Available | Negative | 4224080 - 4228066 | 150460.0 |
| hypothetical protein | DWZ36_17940 | Not Available | Negative | 4228207 - 4231563 | 126653.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_17945 | Not Available | Negative | 4231703 - 4233322 | 61287.8 |
| tonb-dependent receptor | DWZ36_17950 | Not Available | Negative | 4233349 - 4236438 | 115376.0 |
| Trna-his | Not Available | Not Available | Positive | 4236607 - 4236683 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

