Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic ribonucleoside-triphosphate reductase | DWZ36_17860 | Not Available | Negative | 4207125 - 4209218 | 80525.2 |
| hypothetical protein | DWZ36_17865 | Not Available | Positive | 4209930 - 4210181 | 9673.73 |
| acetyl-coa carboxylase biotin carboxylase subunit | DWZ36_17870 | Not Available | Positive | 4210147 - 4210421 | 10299.5 |
| n-acetyltransferase | DWZ36_17875 | Not Available | Negative | 4210477 - 4211004 | 20715.6 |
| non-canonical purine ntp diphosphatase | DWZ36_17880 | Not Available | Positive | 4211164 - 4211745 | 21352.7 |
| quinolinate synthase nada | DWZ36_17885 | Not Available | Negative | 4212000 - 4212992 | 36624.0 |
| tonb-dependent receptor | DWZ36_17890 | Not Available | Negative | 4213095 - 4215413 | 88565.0 |
| trmh family rna methyltransferase | DWZ36_17895 | Not Available | Positive | 4216136 - 4216672 | 19947.2 |
| duf4294 domain-containing protein | DWZ36_17900 | Not Available | Negative | 4216703 - 4217275 | 22062.0 |
| helix-hairpin-helix domain-containing protein | DWZ36_17905 | Not Available | Positive | 4217372 - 4219444 | 81316.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

