Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin biosynthesis protein cobd | DWZ36_17810 | Not Available | Negative | 4193160 - 4194092 | 34501.9 |
| pyridoxal phosphate-dependent class ii aminotransferase | DWZ36_17815 | Not Available | Negative | 4194074 - 4195084 | 38761.7 |
| cobyric acid synthase | DWZ36_17820 | Not Available | Negative | 4195077 - 4196567 | 55366.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DWZ36_17825 | Not Available | Negative | 4196567 - 4197142 | 22231.8 |
| cobyrinate a,c-diamide synthase | DWZ36_17830 | Not Available | Negative | 4197139 - 4198467 | 49093.6 |
| putative transporter | DWZ36_17835 | Not Available | Positive | 4198703 - 4200391 | 60780.7 |
| tonb-dependent receptor | DWZ36_17840 | Not Available | Positive | 4200784 - 4202961 | 81246.7 |
| tonb-dependent receptor | DWZ36_17845 | Not Available | Positive | 4203334 - 4205394 | 78366.5 |
| heme-binding protein | DWZ36_17850 | Not Available | Positive | 4205428 - 4206624 | 45142.5 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DWZ36_17855 | Not Available | Negative | 4206674 - 4207141 | 17754.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

