Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DWZ36_17600 | Not Available | Negative | 4153583 - 4155223 | 62633.3 |
| aspartate-alanine antiporter | DWZ36_17605 | Not Available | Negative | 4155243 - 4156943 | 61072.4 |
| hypothetical protein | DWZ36_17610 | Not Available | Positive | 4157069 - 4157890 | 31612.6 |
| hypothetical protein | DWZ36_17620 | Not Available | Positive | 4158876 - 4159280 | 14740.9 |
| hypothetical protein | DWZ36_17625 | Not Available | Positive | 4159286 - 4160641 | 49764.9 |
| hypothetical protein | DWZ36_17630 | Not Available | Positive | 4160772 - 4164236 | 129748.0 |
| hypothetical protein | DWZ36_17635 | Not Available | Positive | 4164260 - 4164580 | 11673.2 |
| type iv secretory system conjugative dna transfer family protein | DWZ36_17640 | Not Available | Positive | 4164648 - 4166252 | 61220.6 |
| mobilization protein | DWZ36_17645 | Not Available | Negative | 4166265 - 4167215 | 37427.5 |
| mobilization protein | DWZ36_17650 | Not Available | Negative | 4167205 - 4167747 | 20732.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

