Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate dehydrogenase-like protein | DWZ36_17450 | Not Available | Positive | 4117267 - 4118241 | 35625.3 |
| long-chain fatty acid--coa ligase | DWZ36_17455 | Not Available | Positive | 4118418 - 4120076 | 62504.7 |
| hypothetical protein | DWZ36_17460 | Not Available | Positive | 4120329 - 4121714 | 48529.1 |
| duf3943 domain-containing protein | DWZ36_17465 | Not Available | Positive | 4121753 - 4123228 | 56401.4 |
| crp/fnr family transcriptional regulator | DWZ36_17470 | Not Available | Negative | 4123225 - 4123803 | 22582.6 |
| peptidase | DWZ36_17475 | Not Available | Positive | 4123946 - 4125544 | 60227.9 |
| aminopeptidase | DWZ36_17480 | Not Available | Positive | 4125576 - 4126766 | 45290.6 |
| s9 family peptidase | DWZ36_17485 | Not Available | Positive | 4126897 - 4129128 | 84409.6 |
| mobilization protein | DWZ36_17490 | Not Available | Negative | 4129323 - 4129594 | 10449.3 |
| dna primase | DWZ36_17495 | Not Available | Negative | 4129918 - 4130877 | 36958.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

