Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_17400 | Not Available | Negative | 4108132 - 4108638 | 19744.7 |
| glycosyltransferase | DWZ36_17405 | Not Available | Positive | 4108843 - 4110000 | 44874.5 |
| antibiotic biosynthesis monooxygenase | DWZ36_17410 | Not Available | Positive | 4110049 - 4110324 | 10402.5 |
| duf340 domain-containing protein | DWZ36_17415 | Not Available | Positive | 4110879 - 4111166 | 10386.4 |
| lysine exporter lyso family protein | DWZ36_17420 | Not Available | Positive | 4111156 - 4111776 | 22109.5 |
| abc transporter permease | DWZ36_17425 | Not Available | Negative | 4112124 - 4113368 | 46890.5 |
| pyridoxal phosphate-dependent aminotransferase | DWZ36_17430 | Not Available | Negative | 4113370 - 4114572 | 44955.1 |
| fucose isomerase | DWZ36_17435 | Not Available | Positive | 4114738 - 4115973 | 46220.3 |
| duf4494 domain-containing protein | DWZ36_17440 | Not Available | Positive | 4116069 - 4116551 | 18209.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DWZ36_17445 | Not Available | Positive | 4116585 - 4117253 | 25371.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

