Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yebc/pmpr family dna-binding transcriptional regulator | DWZ36_17350 | Not Available | Positive | 4099421 - 4100161 | 27834.7 |
| tigr03905 family tscpd domain-containing protein | DWZ36_17355 | Not Available | Positive | 4100163 - 4100408 | 9080.04 |
| formyltetrahydrofolate deformylase | DWZ36_17360 | Not Available | Positive | 4100862 - 4101719 | 33302.5 |
| imidazole glycerol phosphate synthase subunit hish | DWZ36_17365 | Not Available | Positive | 4101719 - 4102309 | 22284.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DWZ36_17370 | Not Available | Positive | 4102351 - 4103070 | 26581.2 |
| imidazole glycerol phosphate synthase subunit hisf | DWZ36_17375 | Not Available | Positive | 4103080 - 4103835 | 27227.5 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DWZ36_17380 | Not Available | Positive | 4104001 - 4104612 | 23196.7 |
| atp-binding cassette domain-containing protein | DWZ36_17385 | Not Available | Positive | 4104617 - 4105372 | 28375.1 |
| aspartate kinase | DWZ36_17390 | Not Available | Positive | 4105480 - 4106799 | 49296.1 |
| diaminopimelate decarboxylase | DWZ36_17395 | Not Available | Positive | 4106907 - 4108067 | 42735.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

