Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione peroxidase | DWZ36_17300 | Not Available | Negative | 4082600 - 4083139 | 20074.2 |
| hypothetical protein | DWZ36_17305 | Not Available | Positive | 4083145 - 4083345 | 7870.84 |
| aaa family atpase | DWZ36_17310 | Not Available | Positive | 4083349 - 4085121 | 68872.8 |
| sigma-54-dependent fis family transcriptional regulator | DWZ36_17315 | Not Available | Positive | 4085158 - 4086498 | 50182.7 |
| atp-binding protein | DWZ36_17320 | Not Available | Positive | 4086614 - 4087915 | 48986.9 |
| atp-dependent helicase | DWZ36_17325 | Not Available | Positive | 4087996 - 4091172 | 122835.0 |
| pd-(d/e)xk nuclease family protein | DWZ36_17330 | Not Available | Positive | 4091172 - 4094051 | 110969.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DWZ36_17335 | Not Available | Negative | 4094126 - 4094953 | 30704.1 |
| replicative dna helicase | DWZ36_17340 | Not Available | Positive | 4095215 - 4096771 | 57459.0 |
| phenylalanine--trna ligase subunit beta | DWZ36_17345 | Not Available | Positive | 4096925 - 4099387 | 91226.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

