Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DWZ36_17140 | Not Available | Positive | 4049223 - 4050278 | 39331.2 |
| transporter | DWZ36_17150 | Not Available | Negative | 4050864 - 4051823 | 35548.5 |
| n-acetylmuramoyl-l-alanine amidase | DWZ36_17155 | Not Available | Positive | 4051980 - 4053209 | 46293.8 |
| mce family protein | DWZ36_17160 | Not Available | Positive | 4053229 - 4054116 | 32699.6 |
| chromosomal replication initiator protein dnaa | DWZ36_17165 | Not Available | Positive | 4054454 - 4055860 | 53559.4 |
| nadph-dependent oxidoreductase | DWZ36_17170 | Not Available | Negative | 4055945 - 4056685 | 28440.1 |
| hypothetical protein | DWZ36_17175 | Not Available | Positive | 4056750 - 4056968 | 8589.67 |
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | DWZ36_17180 | Not Available | Positive | 4057029 - 4059575 | 96377.3 |
| is1182 family transposase | DWZ36_17185 | Not Available | Negative | 4059757 - 4061268 | 59205.8 |
| hypothetical protein | DWZ36_17190 | Not Available | Negative | 4061437 - 4064409 | 110690.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

