Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 36 | DWZ36_01650 | Not Available | Negative | 433173 - 435248 | 78514.0 |
| glycoside hydrolase family 29 | DWZ36_01655 | Not Available | Negative | 435255 - 436640 | 52597.4 |
| duf229 domain-containing protein | DWZ36_01660 | Not Available | Negative | 436644 - 438080 | 54996.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_01665 | Not Available | Negative | 438317 - 440365 | 77637.2 |
| tonb-dependent receptor | DWZ36_01670 | Not Available | Negative | 440378 - 443545 | 118083.0 |
| response regulator | DWZ36_01675 | Not Available | Positive | 443730 - 447803 | 154640.0 |
| 6-phosphofructokinase | DWZ36_01680 | Not Available | Negative | 447813 - 448823 | 35787.3 |
| hypothetical protein | DWZ36_01685 | Not Available | Positive | 448971 - 450476 | 57457.0 |
| hypothetical protein | DWZ36_01690 | Not Available | Positive | 450481 - 452403 | 73354.4 |
| duf3108 domain-containing protein | DWZ36_01695 | Not Available | Positive | 452400 - 453209 | 31356.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

