Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine abc transporter substrate-binding protein | DWZ36_16925 | Not Available | Negative | 4004401 - 4005219 | 31019.2 |
| hypothetical protein | DWZ36_16930 | Not Available | Negative | 4005228 - 4007339 | 80786.2 |
| hypothetical protein | DWZ36_16935 | Not Available | Positive | 4007251 - 4007439 | 7558.39 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DWZ36_16940 | Not Available | Negative | 4007433 - 4007975 | 19888.6 |
| 2-oxoglutarate oxidoreductase | DWZ36_16945 | Not Available | Negative | 4007989 - 4008753 | 27882.8 |
| hypothetical protein | DWZ36_16950 | Not Available | Negative | 4008772 - 4008939 | 6434.4 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DWZ36_16955 | Not Available | Negative | 4008946 - 4010028 | 39202.6 |
| 4fe-4s dicluster domain-containing protein | DWZ36_16960 | Not Available | Negative | 4010040 - 4010270 | 8117.04 |
| tetratricopeptide repeat protein | DWZ36_16965 | Not Available | Negative | 4010281 - 4010577 | 11531.6 |
| site-specific integrase | DWZ36_16975 | Not Available | Positive | 4011547 - 4012485 | 36160.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

