Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 25 protein | DWZ36_16870 | Not Available | Positive | 3992755 - 3993621 | 33910.9 |
| yccf domain-containing protein | DWZ36_16875 | Not Available | Positive | 3993667 - 3994035 | 13206.2 |
| 50s ribosomal protein l11 methyltransferase | DWZ36_16880 | Not Available | Negative | 3994257 - 3995102 | 31658.8 |
| thioredoxin | DWZ36_16885 | Not Available | Negative | 3995113 - 3995373 | 10400.5 |
| helicase | DWZ36_16890 | Not Available | Negative | 3995604 - 3997694 | 81455.1 |
| dna-binding protein | DWZ36_16900 | Not Available | Positive | 3998100 - 3998723 | 23853.8 |
| hypothetical protein | DWZ36_16905 | Not Available | Positive | 3999098 - 4000498 | 52376.5 |
| hypothetical protein | DWZ36_16910 | Not Available | Positive | 4000542 - 4002113 | 58572.0 |
| duf4421 domain-containing protein | DWZ36_16915 | Not Available | Negative | 4002186 - 4003313 | 43106.2 |
| gfo/idh/moca family oxidoreductase | DWZ36_16920 | Not Available | Negative | 4003323 - 4004312 | 36847.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

