Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii pantothenate kinase | DWZ36_16815 | Not Available | Positive | 3977928 - 3978752 | 29299.7 |
| is66 family transposase | DWZ36_16820 | Not Available | Positive | 3979026 - 3980363 | 51874.9 |
| sodium-translocating pyrophosphatase | DWZ36_16830 | Not Available | Negative | 3981502 - 3982554 | 37131.8 |
| ygiq family radical sam protein | DWZ36_16835 | Not Available | Negative | 3982817 - 3984706 | 72335.1 |
| hypothetical protein | DWZ36_16840 | Not Available | Negative | 3984758 - 3985075 | 12244.6 |
| xanthan lyase | DWZ36_16845 | Not Available | Negative | 3985166 - 3988036 | 107000.0 |
| alpha-1,3-galactosidase b | DWZ36_16850 | Not Available | Positive | 3988119 - 3989936 | 68960.8 |
| acyltransferase | DWZ36_16855 | Not Available | Negative | 3990019 - 3990576 | 21364.4 |
| hypothetical protein | DWZ36_16860 | Not Available | Negative | 3990587 - 3990835 | 9206.38 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DWZ36_16865 | Not Available | Positive | 3990986 - 3992629 | 59907.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

