Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | DWZ36_16715 | Not Available | Positive | 3953233 - 3955821 | 97149.7 |
| hypothetical protein | DWZ36_16720 | Not Available | Negative | 3956933 - 3957373 | 16021.2 |
| dephospho-coa kinase | DWZ36_16725 | Not Available | Negative | 3957440 - 3958036 | 22356.1 |
| ybbr-like domain-containing protein | DWZ36_16730 | Not Available | Negative | 3958029 - 3959042 | 39038.4 |
| preprotein translocase subunit yajc | DWZ36_16735 | Not Available | Negative | 3959056 - 3959370 | 11609.3 |
| transcription antitermination factor nusb | DWZ36_16740 | Not Available | Negative | 3959427 - 3960353 | 36291.4 |
| duf3276 family protein | DWZ36_16745 | Not Available | Positive | 3960549 - 3960932 | 14786.4 |
| 50s ribosomal protein l25 | DWZ36_16750 | Not Available | Positive | 3961112 - 3961708 | 21429.4 |
| aminoacyl-trna hydrolase | DWZ36_16755 | Not Available | Positive | 3961733 - 3962296 | 20618.0 |
| rna-binding s4 domain-containing protein | DWZ36_16760 | Not Available | Positive | 3962296 - 3962724 | 16437.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

