Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | DWZ36_01600 | Not Available | Negative | 421066 - 421869 | 30911.8 |
| rna polymerase sigma-70 factor | DWZ36_01605 | Not Available | Negative | 421939 - 422448 | 19967.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_01610 | Not Available | Negative | 422694 - 424397 | 63029.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_01615 | Not Available | Negative | 424397 - 427438 | 112142.0 |
| rna polymerase sigma-70 factor | DWZ36_01620 | Not Available | Positive | 427759 - 428304 | 21397.0 |
| phosphoribosylglycinamide formyltransferase | DWZ36_01625 | Not Available | Negative | 428276 - 428854 | 21386.1 |
| acyl carrier protein | DWZ36_01630 | Not Available | Positive | 429007 - 429243 | 8382.75 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DWZ36_01635 | Not Available | Positive | 429262 - 430527 | 44835.9 |
| ribonuclease 3 | DWZ36_01640 | Not Available | Positive | 430530 - 431456 | 35251.2 |
| sulfatase | DWZ36_01645 | Not Available | Negative | 431601 - 433154 | 57826.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

