Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5115 domain-containing protein | DWZ36_16305 | Not Available | Positive | 3873483 - 3874898 | 51141.5 |
| alpha-amylase | DWZ36_16310 | Not Available | Positive | 3875030 - 3877111 | 78010.0 |
| arabinogalactan endo-1,4-beta-galactosidase | DWZ36_16315 | Not Available | Positive | 3877125 - 3878267 | 43136.1 |
| hypothetical protein | DWZ36_16320 | Not Available | Negative | 3878364 - 3879344 | 35213.9 |
| peptidase | DWZ36_16325 | Not Available | Negative | 3879367 - 3881223 | 67259.1 |
| ytxh domain-containing protein | DWZ36_16330 | Not Available | Negative | 3881361 - 3881609 | 9371.17 |
| hypothetical protein | DWZ36_16335 | Not Available | Negative | 3881815 - 3882138 | 11757.4 |
| xanthine phosphoribosyltransferase | DWZ36_16340 | Not Available | Positive | 3882495 - 3883061 | 20888.7 |
| purine permease | DWZ36_16345 | Not Available | Positive | 3883066 - 3884397 | 46614.3 |
| phosphotransferase | DWZ36_16350 | Not Available | Positive | 3884500 - 3885930 | 55485.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

