Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ36_16245 | Not Available | Positive | 3857244 - 3857729 | 19011.1 |
| hypothetical protein | DWZ36_16255 | Not Available | Positive | 3860428 - 3860673 | 9481.4 |
| hypothetical protein | DWZ36_16265 | Not Available | Positive | 3860797 - 3861093 | 11332.5 |
| hypothetical protein | DWZ36_16270 | Not Available | Negative | 3861200 - 3862795 | 62535.7 |
| alpha-amylase | DWZ36_16275 | Not Available | Positive | 3863044 - 3864894 | 70876.0 |
| glycoside hydrolase family 97 protein | DWZ36_16280 | Not Available | Positive | 3864936 - 3867152 | 84360.1 |
| hypothetical protein | DWZ36_16285 | Not Available | Positive | 3867205 - 3867384 | 7034.63 |
| tonb-dependent receptor | DWZ36_16290 | Not Available | Positive | 3867552 - 3870632 | 113514.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_16295 | Not Available | Positive | 3870644 - 3872266 | 59867.8 |
| susf/suse family outer membrane protein | DWZ36_16300 | Not Available | Positive | 3872303 - 3873460 | 41909.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

