Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4847 domain-containing protein | DWZ36_16195 | Not Available | Positive | 3844986 - 3845480 | 18544.7 |
| cmp deaminase | DWZ36_16200 | Not Available | Positive | 3845485 - 3845919 | 16211.4 |
| s41 family peptidase | DWZ36_16205 | Not Available | Positive | 3845934 - 3847682 | 64897.7 |
| 5-formyltetrahydrofolate cyclo-ligase | DWZ36_16210 | Not Available | Positive | 3847606 - 3848136 | 20433.5 |
| dna repair protein reco | DWZ36_16215 | Not Available | Negative | 3848355 - 3849080 | 28652.8 |
| Trna-glu | Not Available | Not Available | Positive | 3849324 - 3849398 | Not Available |
| 30s ribosomal protein s20 | DWZ36_16225 | Not Available | Positive | 3849438 - 3849692 | 9698.07 |
| dna topoisomerase (atp-hydrolyzing) subunit b | DWZ36_16230 | Not Available | Positive | 3850139 - 3852103 | 72969.4 |
| 4-alpha-glucanotransferase | DWZ36_16235 | Not Available | Positive | 3852431 - 3855109 | 104500.0 |
| mfs transporter | DWZ36_16240 | Not Available | Positive | 3855183 - 3856538 | 49044.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

