Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_16145 | Not Available | Positive | 3836595 - 3836843 | 9849.11 |
| duf4199 domain-containing protein | DWZ36_16150 | Not Available | Positive | 3836850 - 3837383 | 20538.6 |
| glycosyltransferase | DWZ36_16155 | Not Available | Positive | 3837387 - 3838340 | 36365.1 |
| hypothetical protein | DWZ36_16160 | Not Available | Positive | 3838342 - 3838890 | 20757.9 |
| hypothetical protein | DWZ36_16165 | Not Available | Positive | 3838838 - 3839539 | 26539.9 |
| manganese efflux pump | DWZ36_16170 | Not Available | Positive | 3839543 - 3840115 | 21225.7 |
| fad:protein fmn transferase | DWZ36_16175 | Not Available | Positive | 3840129 - 3841145 | 37820.5 |
| marc family protein | DWZ36_16180 | Not Available | Negative | 3841304 - 3841906 | 22140.0 |
| crp/fnr family transcriptional regulator | DWZ36_16185 | Not Available | Positive | 3842095 - 3842772 | 26004.6 |
| m3 family peptidase | DWZ36_16190 | Not Available | Positive | 3842930 - 3844972 | 77820.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

