Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidohydrolase | DWZ36_15920 | Not Available | Positive | 3775485 - 3776408 | 35522.1 |
| l-fucose:h+ symporter permease | DWZ36_15925 | Not Available | Positive | 3776435 - 3777694 | 47261.1 |
| sorbitol dehydrogenase | DWZ36_15930 | Not Available | Positive | 3777717 - 3778736 | 36707.0 |
| naat family transporter | DWZ36_15935 | Not Available | Negative | 3778809 - 3779453 | 23868.2 |
| duf255 domain-containing protein | DWZ36_15945 | Not Available | Negative | 3780100 - 3781266 | 44550.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15950 | Not Available | Negative | 3781285 - 3782775 | 55759.7 |
| tonb-dependent receptor | DWZ36_15955 | Not Available | Negative | 3782796 - 3786113 | 122704.0 |
| duf4974 domain-containing protein | DWZ36_15960 | Not Available | Negative | 3786166 - 3787317 | 43733.0 |
| sigma-70 family rna polymerase sigma factor | DWZ36_15965 | Not Available | Negative | 3787385 - 3787969 | 23161.5 |
| glycoside hydrolase | DWZ36_15970 | Not Available | Negative | 3788070 - 3789734 | 61567.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

