Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase s41 | DWZ36_15870 | Not Available | Positive | 3760525 - 3761553 | 39153.0 |
| Trna-leu | Not Available | Not Available | Positive | 3761622 - 3761706 | Not Available |
| duf5110 domain-containing protein | DWZ36_15880 | Not Available | Negative | 3761804 - 3764257 | 93567.2 |
| glycoside hydrolase family 97 protein | DWZ36_15885 | Not Available | Negative | 3764432 - 3766315 | 71898.3 |
| l-rhamnose mutarotase | DWZ36_15890 | Not Available | Negative | 3766387 - 3766770 | 15479.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15895 | Not Available | Negative | 3766793 - 3768481 | 64006.0 |
| tonb-dependent receptor | DWZ36_15900 | Not Available | Negative | 3768507 - 3771578 | 113422.0 |
| alpha-l-fucosidase | DWZ36_15905 | Not Available | Negative | 3771669 - 3773315 | 62710.9 |
| arac family transcriptional regulator | DWZ36_15910 | Not Available | Positive | 3773557 - 3774417 | 33567.5 |
| aldo/keto reductase | DWZ36_15915 | Not Available | Positive | 3774535 - 3775467 | 34858.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

