Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-containing alcohol dehydrogenase | DWZ36_15820 | Not Available | Positive | 3747010 - 3748404 | 51593.0 |
| hypothetical protein | DWZ36_15825 | Not Available | Positive | 3748487 - 3749440 | 35136.6 |
| abc transporter atp-binding protein | DWZ36_15830 | Not Available | Negative | 3749452 - 3750111 | 23899.1 |
| trna threonylcarbamoyladenosine dehydratase | DWZ36_15835 | Not Available | Negative | 3750114 - 3750836 | 27062.2 |
| cation:proton antiporter | DWZ36_15840 | Not Available | Negative | 3750823 - 3752970 | 80166.6 |
| aspartate-semialdehyde dehydrogenase | DWZ36_15845 | Not Available | Positive | 3753136 - 3754146 | 37267.8 |
| peptidylprolyl isomerase | DWZ36_15850 | Not Available | Negative | 3754629 - 3755270 | 23289.7 |
| glycine--trna ligase | DWZ36_15855 | Not Available | Negative | 3755281 - 3756822 | 59436.0 |
| dna gyrase/topoisomerase iv subunit a | DWZ36_15860 | Not Available | Positive | 3756974 - 3759667 | 102634.0 |
| duf3316 domain-containing protein | DWZ36_15865 | Not Available | Positive | 3759671 - 3760516 | 31970.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

