Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DWZ36_15670 | Not Available | Negative | 3709291 - 3710079 | 30418.6 |
| histidine kinase | DWZ36_15675 | Not Available | Negative | 3710072 - 3711100 | 39049.9 |
| tolc family protein | DWZ36_15680 | Not Available | Negative | 3711241 - 3712530 | 48588.8 |
| acrb/acrd/acrf family protein | DWZ36_15685 | Not Available | Negative | 3712517 - 3715576 | 113018.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_15690 | Not Available | Negative | 3715597 - 3716622 | 37956.2 |
| glsb/yeaq/ymge family stress response membrane protein | DWZ36_15695 | Not Available | Positive | 3716862 - 3717113 | 8688.23 |
| tolc family protein | DWZ36_15700 | Not Available | Negative | 3717202 - 3718659 | 54833.0 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DWZ36_15705 | Not Available | Negative | 3718637 - 3721786 | 115620.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_15710 | Not Available | Negative | 3721799 - 3722950 | 43842.2 |
| hypothetical protein | DWZ36_15715 | Not Available | Negative | 3723073 - 3723495 | 16035.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

