Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3098 domain-containing protein | DWZ36_15620 | Not Available | Positive | 3702428 - 3702673 | 9145.44 |
| undecaprenyl-diphosphatase | DWZ36_15625 | Not Available | Positive | 3702711 - 3703511 | 28480.0 |
| trna pseudouridine(55) synthase trub | DWZ36_15630 | Not Available | Positive | 3703516 - 3704223 | 26653.3 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DWZ36_15635 | Not Available | Positive | 3704235 - 3705290 | 40182.2 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DWZ36_15640 | Not Available | Positive | 3705309 - 3705755 | 16503.0 |
| hypothetical protein | DWZ36_15645 | Not Available | Negative | 3705842 - 3706156 | 11879.3 |
| hemolysin | DWZ36_15650 | Not Available | Negative | 3706169 - 3707029 | 32446.3 |
| hypothetical protein | DWZ36_15655 | Not Available | Negative | 3707059 - 3707631 | 22589.2 |
| duf3244 domain-containing protein | DWZ36_15660 | Not Available | Negative | 3707643 - 3708014 | 14228.2 |
| tetratricopeptide repeat-containing protein | DWZ36_15665 | Not Available | Negative | 3708197 - 3709278 | 41854.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

