Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transporter | DWZ36_15520 | Not Available | Positive | 3669777 - 3671438 | 59427.0 |
| fructose 1,6-bisphosphatase | DWZ36_15525 | Not Available | Positive | 3671448 - 3673448 | 76562.5 |
| yitt family protein | DWZ36_15530 | Not Available | Negative | 3673665 - 3674561 | 33215.4 |
| leucine--trna ligase | DWZ36_15535 | Not Available | Negative | 3674643 - 3677477 | 108397.0 |
| protease | DWZ36_15540 | Not Available | Negative | 3677776 - 3681000 | 120701.0 |
| rna polymerase sigma-70 factor | DWZ36_15545 | Not Available | Positive | 3681179 - 3681766 | 22777.2 |
| fecr family protein | DWZ36_15550 | Not Available | Positive | 3681855 - 3682865 | 38678.5 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_15555 | Not Available | Positive | 3682930 - 3686457 | 131487.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15560 | Not Available | Positive | 3686479 - 3688401 | 73144.0 |
| sulfatase | DWZ36_15565 | Not Available | Positive | 3688496 - 3689917 | 53009.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

