Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_01485 | Not Available | Positive | 385503 - 385694 | 7652.25 |
| hypothetical protein | DWZ36_01500 | Not Available | Negative | 387909 - 391208 | 124967.0 |
| rhamnogalacturonan acetylesterase | DWZ36_01505 | Not Available | Negative | 391230 - 392786 | 57980.5 |
| rhamnogalacturonan lyase | DWZ36_01510 | Not Available | Negative | 393021 - 394847 | 66911.8 |
| glycoside hydrolase family 2 protein | DWZ36_01515 | Not Available | Negative | 394972 - 397977 | 114627.0 |
| glycoside hydrolase family 2 protein | DWZ36_01520 | Not Available | Negative | 398183 - 401038 | 106514.0 |
| oligogalacturonide lyase | DWZ36_01530 | Not Available | Negative | 402459 - 403784 | 50002.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_01535 | Not Available | Negative | 404000 - 406309 | 86748.5 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_01540 | Not Available | Negative | 406341 - 409232 | 107491.0 |
| hypothetical protein | DWZ36_01545 | Not Available | Negative | 409257 - 409463 | 8027.76 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

