Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3826 domain-containing protein | DWZ36_15445 | Not Available | Negative | 3645520 - 3646188 | 25071.4 |
| polysaccharide lyase | DWZ36_15450 | Not Available | Negative | 3646213 - 3647946 | 64377.8 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15455 | Not Available | Negative | 3648115 - 3650124 | 75935.2 |
| tonb-dependent receptor | DWZ36_15460 | Not Available | Negative | 3650145 - 3653600 | 126230.0 |
| sugar phosphate isomerase/epimerase | DWZ36_15465 | Not Available | Negative | 3653630 - 3654514 | 33290.8 |
| response regulator | DWZ36_15470 | Not Available | Negative | 3654680 - 3659083 | 168924.0 |
| glycoside hydrolase family 2 | DWZ36_15475 | Not Available | Negative | 3659209 - 3661833 | 98245.4 |
| duf1016 domain-containing protein | DWZ36_15505 | Not Available | Negative | 3665111 - 3666229 | 43173.7 |
| rna-binding transcriptional accessory protein | DWZ36_15510 | Not Available | Positive | 3666751 - 3668880 | 79610.4 |
| nad(+) diphosphatase | DWZ36_15515 | Not Available | Positive | 3668903 - 3669700 | 30119.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

