Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_15385 | Not Available | Negative | 3626293 - 3626772 | 17816.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15390 | Not Available | Negative | 3626802 - 3628661 | 69988.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_15395 | Not Available | Negative | 3628691 - 3631825 | 116027.0 |
| mobilization protein | DWZ36_15410 | Not Available | Negative | 3633342 - 3634187 | 32223.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15415 | Not Available | Negative | 3634247 - 3636217 | 73830.3 |
| tonb-dependent receptor | DWZ36_15420 | Not Available | Negative | 3636242 - 3639442 | 118217.0 |
| hypothetical protein | DWZ36_15425 | Not Available | Negative | 3639477 - 3639761 | 11191.4 |
| sigma-70 family rna polymerase sigma factor | DWZ36_15430 | Not Available | Negative | 3639810 - 3640364 | 21477.1 |
| pectate lyase | DWZ36_15435 | Not Available | Negative | 3640551 - 3643637 | 115906.0 |
| polysaccharide lyase | DWZ36_15440 | Not Available | Negative | 3643639 - 3645321 | 61296.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

