Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2851 family protein | DWZ36_15135 | Not Available | Negative | 3564011 - 3565276 | 48573.2 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DWZ36_15140 | Not Available | Positive | 3565360 - 3566115 | 27422.6 |
| s26 family signal peptidase | DWZ36_15145 | Not Available | Positive | 3566119 - 3567543 | 55209.5 |
| signal peptidase i | DWZ36_15150 | Not Available | Positive | 3567581 - 3568444 | 32796.6 |
| hypothetical protein | DWZ36_15155 | Not Available | Positive | 3568444 - 3569100 | 25575.3 |
| sdr family nad(p)-dependent oxidoreductase | DWZ36_15160 | Not Available | Positive | 3569105 - 3569917 | 28669.7 |
| mannonate dehydratase | DWZ36_15165 | Not Available | Positive | 3569957 - 3571132 | 44526.6 |
| tonb-dependent receptor | DWZ36_15170 | Not Available | Positive | 3571347 - 3574568 | 118849.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_15175 | Not Available | Positive | 3574573 - 3576435 | 70185.9 |
| duf4976 domain-containing protein | DWZ36_15180 | Not Available | Positive | 3576458 - 3578032 | 61200.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

