Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family transcriptional regulator | DWZ36_15085 | Not Available | Negative | 3548194 - 3548523 | 12226.9 |
| pyridine nucleotide-disulfide oxidoreductase | DWZ36_15090 | Not Available | Negative | 3548557 - 3551058 | 90809.9 |
| mate family efflux transporter | DWZ36_15095 | Not Available | Positive | 3551295 - 3552650 | 49657.3 |
| slc13 family permease | DWZ36_15100 | Not Available | Negative | 3552613 - 3554475 | 67164.1 |
| helicase | DWZ36_15105 | Not Available | Positive | 3554795 - 3556051 | 48865.9 |
| lactaldehyde reductase | DWZ36_15110 | Not Available | Positive | 3556265 - 3557419 | 40917.7 |
| hypothetical protein | DWZ36_15115 | Not Available | Positive | 3557453 - 3558142 | 26553.2 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_15120 | Not Available | Positive | 3558181 - 3561327 | 115894.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_15125 | Not Available | Positive | 3561342 - 3562826 | 55584.1 |
| metallophosphatase | DWZ36_15130 | Not Available | Positive | 3562852 - 3563853 | 36945.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

