Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional metallophosphatase/5'-nucleotidase | DWZ36_01425 | Not Available | Negative | 368426 - 369268 | 31282.2 |
| 5'-nucleotidase | DWZ36_01430 | Not Available | Negative | 369280 - 370059 | 27882.5 |
| 50s ribosomal protein l19 | DWZ36_01435 | Not Available | Positive | 370257 - 370610 | 13130.2 |
| hypothetical protein | DWZ36_01440 | Not Available | Positive | 370765 - 370983 | 7895.11 |
| hybrid sensor histidine kinase/response regulator | DWZ36_01445 | Not Available | Negative | 371065 - 375351 | 162753.0 |
| l-rhamnose mutarotase | DWZ36_01450 | Not Available | Negative | 375432 - 375746 | 12242.6 |
| glycoside hydrolase family 88 protein | DWZ36_01455 | Not Available | Negative | 375784 - 377199 | 53303.9 |
| rhamnogalacturonan lyase | DWZ36_01460 | Not Available | Negative | 377212 - 379119 | 70693.4 |
| glycoside hydrolase family 28 protein | DWZ36_01465 | Not Available | Negative | 379116 - 380504 | 52169.8 |
| hypothetical protein | DWZ36_01470 | Not Available | Negative | 380568 - 382919 | 89625.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

