Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | DWZ36_14885 | Not Available | Positive | 3498726 - 3499640 | 33411.3 |
| threonine ammonia-lyase | DWZ36_14890 | Not Available | Positive | 3499837 - 3501033 | 42410.4 |
| rsec/mucc family positive regulator of sigma(e) | DWZ36_14895 | Not Available | Positive | 3501212 - 3501640 | 15752.6 |
| fe-s cluster domain-containing protein | DWZ36_14900 | Not Available | Positive | 3501661 - 3502614 | 32597.8 |
| electron transport complex subunit rsxc | DWZ36_14905 | Not Available | Positive | 3502654 - 3503991 | 47119.8 |
| rnfabcdge type electron transport complex subunit d | DWZ36_14910 | Not Available | Positive | 3504006 - 3504995 | 35342.5 |
| rnfabcdge type electron transport complex subunit g | DWZ36_14915 | Not Available | Positive | 3504992 - 3505786 | 27067.9 |
| electron transport complex subunit e | DWZ36_14920 | Not Available | Positive | 3505801 - 3506385 | 20626.5 |
| electron transport complex subunit rsxa | DWZ36_14925 | Not Available | Positive | 3506404 - 3507006 | 21298.3 |
| hypothetical protein | DWZ36_14930 | Not Available | Positive | 3507148 - 3508044 | 33994.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

