Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor 4 | DWZ36_14835 | Not Available | Positive | 3482545 - 3484326 | 66375.4 |
| na+/h+ antiporter nhaa | DWZ36_14840 | Not Available | Positive | 3484458 - 3485798 | 48656.6 |
| pas domain-containing sensor histidine kinase | DWZ36_14845 | Not Available | Negative | 3485801 - 3488074 | 87676.4 |
| amino acid permease | DWZ36_14850 | Not Available | Negative | 3488291 - 3489865 | 56405.6 |
| two pore domain potassium channel family protein | DWZ36_14855 | Not Available | Positive | 3490032 - 3490766 | 28208.9 |
| transglutaminase domain-containing protein | DWZ36_14860 | Not Available | Positive | 3490848 - 3493511 | 99164.9 |
| copper homeostasis protein cutc | DWZ36_14865 | Not Available | Negative | 3493606 - 3494469 | 31413.6 |
| glutaminase | DWZ36_14870 | Not Available | Negative | 3494770 - 3495732 | 34758.9 |
| glutamate decarboxylase | DWZ36_14875 | Not Available | Negative | 3495798 - 3497246 | 54672.7 |
| mfs transporter | DWZ36_14880 | Not Available | Positive | 3497504 - 3498694 | 43394.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

