Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_14785 | Not Available | Positive | 3471180 - 3472274 | 40051.5 |
| tolc family protein | DWZ36_14790 | Not Available | Positive | 3472287 - 3473603 | 49375.2 |
| quinoprotein amine dehydrogenase | DWZ36_14795 | Not Available | Negative | 3473733 - 3474809 | 39472.4 |
| hypothetical protein | DWZ36_14800 | Not Available | Negative | 3474841 - 3476916 | 78237.5 |
| replication-associated recombination protein a | DWZ36_14805 | Not Available | Positive | 3477156 - 3478433 | 47249.0 |
| d-2-hydroxyacid dehydrogenase | DWZ36_14810 | Not Available | Positive | 3478604 - 3479560 | 34358.8 |
| c_gcaxxg_c_c family protein | DWZ36_14815 | Not Available | Positive | 3479604 - 3480107 | 18588.2 |
| hypothetical protein | DWZ36_14820 | Not Available | Positive | 3480264 - 3480467 | 7433.15 |
| duf2813 domain-containing protein | DWZ36_14825 | Not Available | Positive | 3480668 - 3481756 | 41425.4 |
| duf4276 family protein | DWZ36_14830 | Not Available | Positive | 3481763 - 3482425 | 25287.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

