Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DWZ36_14685 | Not Available | Positive | 3439753 - 3441036 | 48770.1 |
| silent information regulator protein sir2 | DWZ36_14690 | Not Available | Positive | 3441052 - 3442905 | 69376.9 |
| glycoside hydrolase | DWZ36_14695 | Not Available | Positive | 3443019 - 3446306 | 122952.0 |
| glycoside hydrolase family 88 protein | DWZ36_14700 | Not Available | Positive | 3446447 - 3447580 | 43912.1 |
| beta-galactosidase | DWZ36_14705 | Not Available | Negative | 3447699 - 3449813 | 81057.4 |
| glycoside hydrolase | DWZ36_14710 | Not Available | Negative | 3449792 - 3452146 | 89205.6 |
| beta-glucuronidase | DWZ36_14715 | Not Available | Positive | 3452358 - 3455225 | 109996.0 |
| rhamnogalacturonan acetylesterase | DWZ36_14720 | Not Available | Positive | 3455244 - 3456518 | 47788.3 |
| glycoside hydrolase family 28 protein | DWZ36_14725 | Not Available | Positive | 3456536 - 3458020 | 54948.4 |
| duf4450 domain-containing protein | DWZ36_14730 | Not Available | Positive | 3457998 - 3458696 | 25996.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

