Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | DWZ36_14635 | Not Available | Positive | 3426345 - 3427376 | 40644.0 |
| n-acetylneuraminate synthase | DWZ36_14640 | Not Available | Positive | 3427381 - 3428382 | 37288.2 |
| acylneuraminate cytidylyltransferase family protein | DWZ36_14645 | Not Available | Positive | 3428388 - 3429083 | 25976.3 |
| nucleotidyltransferase | DWZ36_14650 | Not Available | Positive | 3429080 - 3430123 | 39936.1 |
| hypothetical protein | DWZ36_14655 | Not Available | Positive | 3430208 - 3431782 | 61904.1 |
| hypothetical protein | DWZ36_14660 | Not Available | Positive | 3431795 - 3432328 | 20220.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_14665 | Not Available | Positive | 3432334 - 3435108 | 101769.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_14670 | Not Available | Positive | 3435140 - 3437278 | 79373.8 |
| hypothetical protein | DWZ36_14675 | Not Available | Positive | 3437368 - 3437685 | 12135.9 |
| alpha-l-rhamnosidase | DWZ36_14680 | Not Available | Positive | 3437929 - 3439710 | 66681.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

