Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | DWZ36_14585 | Not Available | Positive | 3415372 - 3416721 | 51875.6 |
| hypothetical protein | DWZ36_14590 | Not Available | Positive | 3416740 - 3418779 | 79683.5 |
| transcriptional regulator | DWZ36_14595 | Not Available | Positive | 3419203 - 3420033 | 31660.1 |
| n-acetylmuramoyl-l-alanine amidase | DWZ36_14600 | Not Available | Negative | 3420099 - 3420518 | 15467.5 |
| hypothetical protein | DWZ36_14605 | Not Available | Negative | 3420657 - 3421049 | 14757.0 |
| dna-binding protein | DWZ36_14610 | Not Available | Negative | 3421046 - 3421546 | 17891.4 |
| hypothetical protein | DWZ36_14615 | Not Available | Positive | 3421734 - 3422168 | 16493.8 |
| nucleoside-diphosphate sugar epimerase | DWZ36_14620 | Not Available | Positive | 3422405 - 3423613 | 45770.0 |
| legc family aminotransferase | DWZ36_14625 | Not Available | Positive | 3423632 - 3424786 | 43363.6 |
| udp-n-acetylglucosamine 2-epimerase (hydrolyzing) | DWZ36_14630 | Not Available | Positive | 3425154 - 3426272 | 42111.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

