Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DWZ36_14535 | Not Available | Positive | 3404792 - 3406801 | 77306.4 |
| threonine--trna ligase | DWZ36_14540 | Not Available | Positive | 3406882 - 3408822 | 74203.1 |
| translation initiation factor if-3 | DWZ36_14545 | Not Available | Positive | 3408938 - 3409534 | 22643.4 |
| 50s ribosomal protein l35 | DWZ36_14550 | Not Available | Positive | 3409606 - 3409803 | 7367.31 |
| 50s ribosomal protein l20 | DWZ36_14555 | Not Available | Positive | 3409915 - 3410265 | 13181.3 |
| 4fe-4s ferredoxin | DWZ36_14560 | Not Available | Positive | 3410730 - 3411509 | 29051.1 |
| endolytic transglycosylase mltg | DWZ36_14565 | Not Available | Negative | 3411548 - 3412576 | 39362.6 |
| hypothetical protein | DWZ36_14570 | Not Available | Negative | 3412578 - 3412763 | 7166.81 |
| alpha-n-arabinofuranosidase | DWZ36_14575 | Not Available | Positive | 3412777 - 3414300 | 57343.5 |
| dna/rna non-specific endonuclease | DWZ36_14580 | Not Available | Negative | 3414390 - 3415247 | 32331.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

