Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_14485 | Not Available | Negative | 3397223 - 3397489 | 10057.5 |
| phage holin family protein | DWZ36_14490 | Not Available | Negative | 3397492 - 3397848 | 13343.2 |
| ytxh domain-containing protein | DWZ36_14495 | Not Available | Negative | 3397926 - 3398123 | 6773.24 |
| spor domain-containing protein | DWZ36_14500 | Not Available | Positive | 3398334 - 3398831 | 17961.2 |
| glycoside hydrolase xylanase | DWZ36_14505 | Not Available | Positive | 3398957 - 3399916 | 35488.6 |
| ompa family protein | DWZ36_14510 | Not Available | Negative | 3400248 - 3401321 | 38634.8 |
| duf3869 domain-containing protein | DWZ36_14515 | Not Available | Negative | 3401377 - 3402267 | 31136.8 |
| hypothetical protein | DWZ36_14520 | Not Available | Negative | 3402278 - 3403516 | 47715.3 |
| holliday junction resolvase ruvx | DWZ36_14525 | Not Available | Positive | 3403722 - 3404141 | 15859.5 |
| peptide deformylase | DWZ36_14530 | Not Available | Positive | 3404165 - 3404719 | 21050.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

