Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucuronyl hydrolase | DWZ36_01375 | Not Available | Negative | 355183 - 356409 | 46537.6 |
| helix-turn-helix domain-containing protein | DWZ36_01380 | Not Available | Negative | 356645 - 359449 | 106177.0 |
| Trna-met | Not Available | Not Available | Positive | 359623 - 359696 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 359755 - 359831 | Not Available |
| hypothetical protein | DWZ36_01395 | Not Available | Positive | 360035 - 360421 | 15254.1 |
| yjgp/yjgq family permease | DWZ36_01400 | Not Available | Positive | 360505 - 362403 | 72557.6 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DWZ36_01405 | Not Available | Positive | 362406 - 363620 | 44921.3 |
| pyridoxal phosphate-dependent aminotransferase | DWZ36_01410 | Not Available | Positive | 363746 - 364939 | 43067.4 |
| 4fe-4s dicluster domain-containing protein | DWZ36_01415 | Not Available | Negative | 365117 - 365284 | 5717.65 |
| beta-n-acetylglucosaminidase | DWZ36_01420 | Not Available | Negative | 365402 - 368380 | 111455.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

