Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonucleotide-diphosphate reductase subunit beta | DWZ36_14435 | Not Available | Negative | 3383832 - 3384881 | 41329.8 |
| ribonucleoside-diphosphate reductase subunit alpha | DWZ36_14440 | Not Available | Negative | 3385044 - 3387563 | 95765.6 |
| hypothetical protein | DWZ36_14445 | Not Available | Negative | 3387966 - 3388175 | 7700.39 |
| hypothetical protein | DWZ36_14450 | Not Available | Negative | 3388202 - 3388759 | 21451.8 |
| putative transporter | DWZ36_14455 | Not Available | Negative | 3388779 - 3390467 | 60888.9 |
| methylmalonyl-coa carboxyltransferase | DWZ36_14460 | Not Available | Negative | 3390593 - 3391006 | 15193.4 |
| hypothetical protein | DWZ36_14465 | Not Available | Positive | 3391234 - 3391416 | 7005.89 |
| hypothetical protein | DWZ36_14470 | Not Available | Negative | 3391551 - 3391730 | 6931.84 |
| site-specific integrase | DWZ36_14475 | Not Available | Negative | 3391913 - 3392968 | 40549.3 |
| peptidase s41 | DWZ36_14480 | Not Available | Negative | 3393933 - 3397193 | 123024.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

