Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5063 domain-containing protein | DWZ36_14175 | Not Available | Positive | 3328192 - 3328755 | 21633.7 |
| 3'-5' exonuclease domain-containing protein 2 | DWZ36_14180 | Not Available | Positive | 3328752 - 3329402 | 24635.5 |
| class i sam-dependent rrna methyltransferase | DWZ36_14185 | Not Available | Positive | 3329392 - 3330576 | 44449.1 |
| class i sam-dependent methyltransferase | DWZ36_14190 | Not Available | Negative | 3331229 - 3332017 | 30974.2 |
| autotransporter outer membrane beta-barrel domain-containing protein | DWZ36_14195 | Not Available | Negative | 3332074 - 3333312 | 47303.1 |
| sigma-70 family rna polymerase sigma factor | DWZ36_14200 | Not Available | Negative | 3333309 - 3333854 | 20808.2 |
| galactose mutarotase | DWZ36_14210 | Not Available | Positive | 3334488 - 3335621 | 41898.5 |
| sigma-70 family rna polymerase sigma factor | DWZ36_14215 | Not Available | Positive | 3335808 - 3336278 | 18011.0 |
| hypothetical protein | DWZ36_14220 | Not Available | Positive | 3336269 - 3336835 | 21102.0 |
| duf5024 domain-containing protein | DWZ36_14225 | Not Available | Positive | 3336857 - 3337471 | 22972.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

