Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(38-40) synthase trua | DWZ36_14025 | Not Available | Negative | 3295792 - 3296595 | 30885.8 |
| hypothetical protein | DWZ36_14030 | Not Available | Negative | 3296600 - 3297274 | 24792.2 |
| phoh family protein | DWZ36_14035 | Not Available | Positive | 3297432 - 3298436 | 37733.4 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DWZ36_14040 | Not Available | Positive | 3298457 - 3299401 | 35902.1 |
| demethylmenaquinone methyltransferase | DWZ36_14045 | Not Available | Positive | 3299494 - 3300231 | 27936.8 |
| shikimate dehydrogenase | DWZ36_14050 | Not Available | Positive | 3300250 - 3300990 | 27732.7 |
| alpha/beta hydrolase | DWZ36_14055 | Not Available | Positive | 3300998 - 3301948 | 36526.2 |
| tpm domain-containing protein | DWZ36_14060 | Not Available | Positive | 3301945 - 3302865 | 33346.0 |
| lema family protein | DWZ36_14065 | Not Available | Positive | 3302902 - 3303483 | 21752.9 |
| chorismate synthase | DWZ36_14070 | Not Available | Positive | 3303692 - 3304768 | 39168.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

